I recently switched from using plain Atmel chips to Arduino. Arduino is a development platform that uses an Atmel Atmege168 chip. It simplifies things a lot.
The Arduino board has a USB port. It has a built in FTDI chip for USB to serial conversions.
This HOWTO shows how to communicate between Perl/Linux and the Arduino. Because of the Arduinos FTDI chip, I can use regular serial communication, I just needed to first set up the USB serial adapter drivers. Most modern linux distro should come with them installed.
The perl script will transmit a number, starting at 0, to the Arduino. The Arduino will then echo that number back to your linux/perl computer.
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